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Protonation-Dependent Structural Heterogeneity in the Chromophore Binding Site of Cyanobacterial Phytochrome Cph1
Citation key ISI:000392036000006
Author Escobar, Francisco Velazquez and Lang, Christina and Takiden, Aref and Schneider, Constantin and Balke, Jens and Hughes, Jon and Alexiev, Ulrike and Hildebrandt, Peter and Mroginski, Maria Andrea
Pages 47-57
Year 2017
ISSN 1520-6106
DOI 10.1021/acs.jpcb.6b09600
Address 1155 16TH ST, NW, WASHINGTON, DC 20036 USA
Journal JOURNAL OF PHYSICAL CHEMISTRY B
Volume 121
Number 1
Month JAN 12
Publisher AMER CHEMICAL SOC
Abstract Phytochromes are biological red/far-red light sensors found in many organisms. Photoisomerization of the linear methine-bridged tetrapyrrole triggers transient proton translocation events in the chromophore binding pocket (CBP) leading to major conformational changes of the protein matrix that are in turn associated with signaling. By combining pH-dependent resonance Raman and UV-visible absorption spectroscopy, we analyzed protonation-dependent equilibria in the CBP of Cphl involving the proposed Pr-I and Pr-II substates that prevail below and above pH 7.5, respectively. The protonation pattern and vibrational properties of these states were further characterized by means of hybrid quantummechanics/mole,cular mechanics calculations. From this combined experimental-theoretical study, we were able to identify His260 as the key residue controlling pH-dependent equilibria. This residue is not only responsible for the conformational heterogeneity of CBP in the Pr state of prokaryotic phytochromes, discussed extensively in the past, but it constitutes the sink and source of protons in the proton release/uptake mechanism involving the tetrapyrrole chromophore which finally leads to the formation of the Pfr state. Thus, this work provides valuable information that may guide further experiments toward the understanding of the specific role of protons in controlling structure and function of phytochromes in general.
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